ClinVar Miner

Submissions for variant NM_020208.4(SLC6A20):c.1747C>T (p.Leu583Phe)

gnomAD frequency: 0.00004  dbSNP: rs202094508
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Illumina Laboratory Services, Illumina RCV000323190 SCV000444544 uncertain significance Hyperglycinuria 2018-01-13 criteria provided, single submitter clinical testing This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score, this variant could not be ruled out of causing disease and therefore its association with disease required further investigation. A literature search was performed for the gene, cDNA change, and amino acid change (if applicable). No publications were found based on this search. This variant was therefore classified as a variant of unknown significance for this disease.
Ambry Genetics RCV004021914 SCV003571921 uncertain significance not specified 2022-08-08 criteria provided, single submitter clinical testing The c.1747C>T (p.L583F) alteration is located in exon 11 (coding exon 11) of the SLC6A20 gene. This alteration results from a C to T substitution at nucleotide position 1747, causing the leucine (L) at amino acid position 583 to be replaced by a phenylalanine (F). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

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