ClinVar Miner

Submissions for variant NM_020366.4(RPGRIP1):c.2294G>A (p.Cys765Tyr)

gnomAD frequency: 0.00001  dbSNP: rs1413996964
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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV001309401 SCV001498897 uncertain significance Cone-rod dystrophy 13; Leber congenital amaurosis 6 2022-07-20 criteria provided, single submitter clinical testing In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. This sequence change replaces cysteine, which is neutral and slightly polar, with tyrosine, which is neutral and polar, at codon 765 of the RPGRIP1 protein (p.Cys765Tyr). The frequency data for this variant in the population databases is considered unreliable, as metrics indicate poor data quality at this position in the gnomAD database. Algorithms developed to predict the effect of missense changes on protein structure and function output the following: SIFT: "Tolerated"; PolyPhen-2: "Benign"; Align-GVGD: "Class C0". The tyrosine amino acid residue is found in multiple mammalian species, which suggests that this missense change does not adversely affect protein function. ClinVar contains an entry for this variant (Variation ID: 1011577). This variant has not been reported in the literature in individuals affected with RPGRIP1-related conditions.

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