ClinVar Miner

Submissions for variant NM_020366.4(RPGRIP1):c.2367+1G>A

dbSNP: rs1882968821
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV001054263 SCV001218568 likely pathogenic Cone-rod dystrophy 13; Leber congenital amaurosis 6 2022-03-10 criteria provided, single submitter clinical testing In summary, the currently available evidence indicates that the variant is pathogenic, but additional data are needed to prove that conclusively. Therefore, this variant has been classified as Likely Pathogenic. Algorithms developed to predict the effect of sequence changes on RNA splicing suggest that this variant may disrupt the consensus splice site. ClinVar contains an entry for this variant (Variation ID: 850156). This variant is also known as IVS15+1G>A. Disruption of this splice site has been observed in individual(s) with Leber congenital amaurosis (PMID: 17964524). This variant is not present in population databases (gnomAD no frequency). This sequence change affects a donor splice site in intron 15 of the RPGRIP1 gene. It is expected to disrupt RNA splicing. Variants that disrupt the donor or acceptor splice site typically lead to a loss of protein function (PMID: 16199547), and loss-of-function variants in RPGRIP1 are known to be pathogenic (PMID: 11528500, 23105016).
CeGaT Center for Human Genetics Tuebingen RCV004726837 SCV005329958 pathogenic not provided 2024-08-01 criteria provided, single submitter clinical testing RPGRIP1: PVS1, PM2, PM3

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