ClinVar Miner

Submissions for variant NM_020366.4(RPGRIP1):c.2895+1G>T

gnomAD frequency: 0.00001  dbSNP: rs748072501
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV001880011 SCV002208945 pathogenic Cone-rod dystrophy 13; Leber congenital amaurosis 6 2023-08-30 criteria provided, single submitter clinical testing This sequence change affects a donor splice site in intron 17 of the RPGRIP1 gene. It is expected to disrupt RNA splicing. Variants that disrupt the donor or acceptor splice site typically lead to a loss of protein function (PMID: 16199547), and loss-of-function variants in RPGRIP1 are known to be pathogenic (PMID: 11528500, 23105016). This variant is present in population databases (rs748072501, gnomAD 0.002%). Disruption of this splice site has been observed in individuals with Leber congenital amaurosis (PMID: 33670832; Invitae). ClinVar contains an entry for this variant (Variation ID: 981634). Algorithms developed to predict the effect of sequence changes on RNA splicing suggest that this variant may disrupt the consensus splice site. For these reasons, this variant has been classified as Pathogenic.
Ophthalmic Genetics Group, Institute of Molecular and Clinical Ophthalmology Basel RCV003324559 SCV004030315 pathogenic Leber congenital amaurosis 2023-07-24 criteria provided, single submitter research Clinical significance based on ACMG v2.0
Laboratory of Genetics in Ophthalmology, Institut Imagine RCV001261174 SCV001438570 pathogenic Leber congenital amaurosis 6 no assertion criteria provided research

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