ClinVar Miner

Submissions for variant NM_020461.4(TUBGCP6):c.3288T>G (p.Asp1096Glu)

gnomAD frequency: 0.00045  dbSNP: rs6010209
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001241544 SCV001414567 uncertain significance not provided 2023-12-07 criteria provided, single submitter clinical testing This sequence change replaces aspartic acid, which is acidic and polar, with glutamic acid, which is acidic and polar, at codon 1096 of the TUBGCP6 protein (p.Asp1096Glu). This variant is present in population databases (rs6010209, gnomAD 0.1%). This variant has not been reported in the literature in individuals affected with TUBGCP6-related conditions. ClinVar contains an entry for this variant (Variation ID: 966787). Algorithms developed to predict the effect of missense changes on protein structure and function output the following: SIFT: "Not Available"; PolyPhen-2: "Benign"; Align-GVGD: "Not Available". The glutamic acid amino acid residue is found in multiple mammalian species, which suggests that this missense change does not adversely affect protein function. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Fulgent Genetics, Fulgent Genetics RCV002491806 SCV002783926 uncertain significance Microcephaly and chorioretinopathy 1 2021-08-11 criteria provided, single submitter clinical testing
Ambry Genetics RCV003246799 SCV003938555 likely benign Inborn genetic diseases 2023-05-09 criteria provided, single submitter clinical testing This alteration is classified as likely benign based on a combination of the following: population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.

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