ClinVar Miner

Submissions for variant NM_020461.4(TUBGCP6):c.5107G>A (p.Val1703Met)

gnomAD frequency: 0.00002  dbSNP: rs750468397
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001247692 SCV001421129 uncertain significance not provided 2022-02-23 criteria provided, single submitter clinical testing In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Algorithms developed to predict the effect of missense changes on protein structure and function are either unavailable or do not agree on the potential impact of this missense change (SIFT: "Deleterious"; PolyPhen-2: "Probably Damaging"; Align-GVGD: "Class C0"). ClinVar contains an entry for this variant (Variation ID: 971818). This variant has not been reported in the literature in individuals affected with TUBGCP6-related conditions. This variant is present in population databases (no rsID available, gnomAD 0.004%). This sequence change replaces valine, which is neutral and non-polar, with methionine, which is neutral and non-polar, at codon 1703 of the TUBGCP6 protein (p.Val1703Met).
Ambry Genetics RCV002570356 SCV003549231 uncertain significance Inborn genetic diseases 2022-05-16 criteria provided, single submitter clinical testing The c.5107G>A (p.V1703M) alteration is located in exon 23 (coding exon 23) of the TUBGCP6 gene. This alteration results from a G to A substitution at nucleotide position 5107, causing the valine (V) at amino acid position 1703 to be replaced by a methionine (M). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

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