ClinVar Miner

Submissions for variant NM_020549.5(CHAT):c.1715C>G (p.Ser572Trp)

dbSNP: rs753652169
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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001232268 SCV001404818 pathogenic Familial infantile myasthenia 2023-05-15 criteria provided, single submitter clinical testing For these reasons, this variant has been classified as Pathogenic. Experimental studies have shown that this missense change affects CHAT function (PMID: 21786365). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is expected to disrupt CHAT protein function. ClinVar contains an entry for this variant (Variation ID: 958997). This missense change has been observed in individual(s) with congenital myasthenic syndrome (PMID: 21786365). In at least one individual the data is consistent with being in trans (on the opposite chromosome) from a pathogenic variant. This variant is not present in population databases (gnomAD no frequency). This sequence change replaces serine, which is neutral and polar, with tryptophan, which is neutral and slightly polar, at codon 572 of the CHAT protein (p.Ser572Trp).

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