ClinVar Miner

Submissions for variant NM_020822.3(KCNT1):c.1975C>T (p.Arg659Cys)

gnomAD frequency: 0.00001  dbSNP: rs753599140
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
GeneDx RCV000498415 SCV000589473 uncertain significance not provided 2018-06-27 criteria provided, single submitter clinical testing The R659C variant in the KCNT1 gene has not been published as a pathogenic variant, nor has it been reported as a benign variant to our knowledge. The R659C variant was not observed in approximately 6500 individuals of European and African American ancestry in the NHLBI Exome Sequencing Project, indicating it is not a common benign variant in these populations. The R659C variant is a non-conservative amino acid substitution, which is likely to impact secondary protein structure as these residues differ in polarity, charge, size and/or other properties. This substitution occurs at a position that is conserved in mammals. In silico analysis predicts this variant is probably damaging to the protein structure/function. We interpret R659C as a variant of uncertain significance.
Fulgent Genetics, Fulgent Genetics RCV002506201 SCV002815588 uncertain significance Developmental and epileptic encephalopathy, 14; Autosomal dominant nocturnal frontal lobe epilepsy 5 2022-01-06 criteria provided, single submitter clinical testing

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