ClinVar Miner

Submissions for variant NM_020937.4(FANCM):c.2807C>T (p.Ser936Leu)

gnomAD frequency: 0.00001  dbSNP: rs1594798166
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Total submissions: 4
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001047104 SCV001211039 uncertain significance Fanconi anemia 2024-01-07 criteria provided, single submitter clinical testing This sequence change replaces serine, which is neutral and polar, with leucine, which is neutral and non-polar, at codon 936 of the FANCM protein (p.Ser936Leu). This variant is not present in population databases (gnomAD no frequency). This variant has not been reported in the literature in individuals affected with FANCM-related conditions. ClinVar contains an entry for this variant (Variation ID: 844291). Algorithms developed to predict the effect of missense changes on protein structure and function output the following: SIFT: "Not Available"; PolyPhen-2: "Benign"; Align-GVGD: "Not Available". The leucine amino acid residue is found in multiple mammalian species, which suggests that this missense change does not adversely affect protein function. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Fulgent Genetics, Fulgent Genetics RCV002489597 SCV002792052 uncertain significance Spermatogenic failure 28; Premature ovarian failure 15 2021-10-26 criteria provided, single submitter clinical testing
GeneDx RCV003151830 SCV003840385 uncertain significance not provided 2022-09-13 criteria provided, single submitter clinical testing Not observed at significant frequency in large population cohorts (gnomAD); In silico analysis supports that this missense variant has a deleterious effect on protein structure/function; Has not been previously published as pathogenic or benign to our knowledge
Ambry Genetics RCV003363071 SCV004065544 uncertain significance Inborn genetic diseases 2023-08-04 criteria provided, single submitter clinical testing The c.2807C>T (p.S936L) alteration is located in exon 14 (coding exon 14) of the FANCM gene. This alteration results from a C to T substitution at nucleotide position 2807, causing the serine (S) at amino acid position 936 to be replaced by a leucine (L). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

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