ClinVar Miner

Submissions for variant NM_020964.3(EPG5):c.460A>G (p.Ser154Gly)

gnomAD frequency: 0.00001  dbSNP: rs758319070
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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV002002985 SCV002276759 uncertain significance Vici syndrome 2021-04-08 criteria provided, single submitter clinical testing This sequence change replaces serine with glycine at codon 154 of the EPG5 protein (p.Ser154Gly). The serine residue is weakly conserved and there is a small physicochemical difference between serine and glycine. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Algorithms developed to predict the effect of missense changes on protein structure and function output the following: SIFT: "Tolerated"; PolyPhen-2: "Benign"; Align-GVGD: "Class C0". The glycine amino acid residue is found in multiple mammalian species, suggesting that this missense change does not adversely affect protein function. These predictions have not been confirmed by published functional studies and their clinical significance is uncertain. This variant has not been reported in the literature in individuals with EPG5-related conditions. This variant is present in population databases (rs758319070, ExAC 0.009%).

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