ClinVar Miner

Submissions for variant NM_020964.3(EPG5):c.5584G>T (p.Ala1862Ser)

dbSNP: rs34977955
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV001301725 SCV001490903 uncertain significance Vici syndrome 2022-08-19 criteria provided, single submitter clinical testing This sequence change replaces alanine, which is neutral and non-polar, with serine, which is neutral and polar, at codon 1862 of the EPG5 protein (p.Ala1862Ser). This variant is present in population databases (rs34977955, gnomAD 0.1%). This variant has not been reported in the literature in individuals affected with EPG5-related conditions. ClinVar contains an entry for this variant (Variation ID: 1004938). Algorithms developed to predict the effect of missense changes on protein structure and function output the following: SIFT: "Tolerated"; PolyPhen-2: "Benign"; Align-GVGD: "Class C0". The serine amino acid residue is found in multiple mammalian species, which suggests that this missense change does not adversely affect protein function. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
GeneDx RCV002305594 SCV002599766 uncertain significance not provided 2022-04-29 criteria provided, single submitter clinical testing In silico analysis supports that this missense variant does not alter protein structure/function; Has not been previously published as pathogenic or benign to our knowledge
Ambry Genetics RCV002543089 SCV003739511 uncertain significance Inborn genetic diseases 2022-07-20 criteria provided, single submitter clinical testing The c.5584G>T (p.A1862S) alteration is located in exon 32 (coding exon 32) of the EPG5 gene. This alteration results from a G to T substitution at nucleotide position 5584, causing the alanine (A) at amino acid position 1862 to be replaced by a serine (S). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

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