ClinVar Miner

Submissions for variant NM_020975.6(RET):c.2412G>A (p.Val804=)

gnomAD frequency: 0.00001  dbSNP: rs767045208
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV001337765 SCV001531380 uncertain significance Multiple endocrine neoplasia, type 2 2022-04-29 criteria provided, single submitter clinical testing This sequence change affects codon 804 of the RET mRNA. It is a 'silent' change, meaning that it does not change the encoded amino acid sequence of the RET protein. The frequency data for this variant in the population databases is considered unreliable, as metrics indicate poor data quality at this position in the gnomAD database. This variant has not been reported in the literature in individuals affected with RET-related conditions. ClinVar contains an entry for this variant (Variation ID: 1034965). Algorithms developed to predict the effect of sequence changes on RNA splicing suggest that this variant may create or strengthen a splice site. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Sema4, Sema4 RCV002255182 SCV002529976 uncertain significance Hereditary cancer-predisposing syndrome 2021-11-24 criteria provided, single submitter curation
Ambry Genetics RCV002255182 SCV002736158 likely benign Hereditary cancer-predisposing syndrome 2021-04-28 criteria provided, single submitter clinical testing This alteration is classified as likely benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.

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