ClinVar Miner

Submissions for variant NM_021628.3(ALOXE3):c.834C>A (p.Tyr278Ter)

dbSNP: rs765682032
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Uitto Lab, Thomas Jefferson University RCV000782396 SCV000920917 pathogenic Autosomal recessive congenital ichthyosis 2 2018-06-08 criteria provided, single submitter clinical testing
Victorian Clinical Genetics Services, Murdoch Childrens Research Institute RCV002470977 SCV002768714 pathogenic Autosomal recessive congenital ichthyosis 3 2020-06-11 criteria provided, single submitter clinical testing Based on the classification scheme VCGS_Germline_v1.3.2, this variant is classified as Pathogenic. Following criteria are met: 0102 - Loss of function is a known mechanism of disease in this gene and is associated with congenital ichthyosis. (I) 0106 - This gene is associated with autosomal recessive disease. (I) 0201 - Variant is predicted to cause nonsense-mediated decay (NMD) and loss of protein (premature termination codon is located at least 54 nucleotides upstream of the final exon-exon junction) (exon 8 of 16). (SP) 0251 - This variant is heterozygous. (I) 0304 - Variant is present in gnomAD <0.01 for a recessive condition (1 heterozygote, 0 homozygotes). (SP) 0701 - Other NMD-predicted variants comparable to the one identified in this case have very strong previous evidence for pathogenicity. More than 9 NMD-predicted variants have been associated with autosomal recessive congenital ichthyosis (ClinVar and PMIDs: 16116617, 19131948, 31046801, 26370990). (SP) 0803 - This variant has limited previous evidence of pathogenicity in an unrelated individual. This variant has been reported as pathogenic in a patient with non-bullous congenital ichthyosiform erythroderma (ClinVar). (SP) 0905 - No published segregation evidence has been identified for this variant. (I) 1007 - No published functional evidence has been identified for this variant. (I) 1208 - Inheritance information for this variant is not currently available in this individual. (I) Legend: (SP) - Supporting pathogenic, (I) - Information, (SB) - Supporting benign
Clinical Genetics Laboratory, Skane University Hospital Lund RCV004696988 SCV005199522 pathogenic not provided 2022-05-27 criteria provided, single submitter clinical testing

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