ClinVar Miner

Submissions for variant NM_021922.3(FANCE):c.1237G>A (p.Gly413Ser)

dbSNP: rs757769907
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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001051593 SCV001215758 uncertain significance Fanconi anemia complementation group E 2019-12-11 criteria provided, single submitter clinical testing In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Nucleotide substitutions within the consensus splice site are a relatively common cause of aberrant splicing (PMID: 17576681, 9536098). Algorithms developed to predict the effect of sequence changes on RNA splicing suggest that this variant may disrupt the consensus splice site, but this prediction has not been confirmed by published transcriptional studies. Algorithms developed to predict the effect of missense changes on protein structure and function (SIFT, PolyPhen-2, Align-GVGD) all suggest that this variant is likely to be disruptive, but these predictions have not been confirmed by published functional studies and their clinical significance is uncertain. This variant has not been reported in the literature in individuals with FANCE-related conditions. This variant is present in population databases (rs757769907, ExAC 0.001%). This sequence change replaces glycine with serine at codon 413 of the FANCE protein (p.Gly413Ser). The glycine residue is highly conserved and there is a small physicochemical difference between glycine and serine. This variant also falls at the last nucleotide of exon 6 of the FANCE coding sequence, which is part of the consensus splice site for this exon.

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