ClinVar Miner

Submissions for variant NM_022089.4(ATP13A2):c.1767G>A (p.Pro589=)

gnomAD frequency: 0.00011  dbSNP: rs752208167
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV000878894 SCV001021881 likely benign Kufor-Rakeb syndrome; Autosomal recessive spastic paraplegia type 78 2023-10-04 criteria provided, single submitter clinical testing
Illumina Laboratory Services, Illumina RCV001101081 SCV001257650 uncertain significance Kufor-Rakeb syndrome 2018-01-13 criteria provided, single submitter clinical testing This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score, this variant could not be ruled out of causing disease and therefore its association with disease required further investigation. A literature search was performed for the gene, cDNA change, and amino acid change (if applicable). No publications were found based on this search. This variant was therefore classified as a variant of unknown significance for this disease.
Athena Diagnostics RCV001288805 SCV001476169 benign not specified 2020-03-10 criteria provided, single submitter clinical testing

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