ClinVar Miner

Submissions for variant NM_022089.4(ATP13A2):c.951C>T (p.Cys317=)

gnomAD frequency: 0.00091  dbSNP: rs148391179
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Total submissions: 7
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Illumina Laboratory Services, Illumina RCV000368117 SCV000351405 uncertain significance Kufor-Rakeb syndrome 2018-01-13 criteria provided, single submitter clinical testing This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score, this variant could not be ruled out of causing disease and therefore its association with disease required further investigation. A literature search was performed for the gene, cDNA change, and amino acid change (if applicable). No publications were found based on this search. This variant was therefore classified as a variant of unknown significance for this disease.
Labcorp Genetics (formerly Invitae), Labcorp RCV000874914 SCV001017152 benign Kufor-Rakeb syndrome; Autosomal recessive spastic paraplegia type 78 2024-01-22 criteria provided, single submitter clinical testing
GeneDx RCV001551772 SCV001772346 likely benign not provided 2021-08-30 criteria provided, single submitter clinical testing
Ambry Genetics RCV002374494 SCV002688438 likely benign Inborn genetic diseases 2017-10-13 criteria provided, single submitter clinical testing This alteration is classified as likely benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.
CeGaT Center for Human Genetics Tuebingen RCV001551772 SCV004123311 likely benign not provided 2024-03-01 criteria provided, single submitter clinical testing ATP13A2: BP2, BP4
Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen RCV000368117 SCV000733955 likely benign Kufor-Rakeb syndrome no assertion criteria provided clinical testing
Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center RCV001551772 SCV001969819 likely benign not provided no assertion criteria provided clinical testing

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