ClinVar Miner

Submissions for variant NM_022124.6(CDH23):c.1874G>A (p.Arg625His)

gnomAD frequency: 0.00001  dbSNP: rs200907423
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV001243729 SCV001416905 uncertain significance not provided 2022-08-16 criteria provided, single submitter clinical testing This sequence change replaces arginine, which is basic and polar, with histidine, which is basic and polar, at codon 625 of the CDH23 protein (p.Arg625His). This variant is present in population databases (rs200907423, gnomAD 0.05%). This variant has not been reported in the literature in individuals affected with CDH23-related conditions. ClinVar contains an entry for this variant (Variation ID: 968565). Algorithms developed to predict the effect of missense changes on protein structure and function output the following: SIFT: "Tolerated"; PolyPhen-2: "Not Available"; Align-GVGD: "Class C0". The histidine amino acid residue is found in multiple mammalian species, which suggests that this missense change does not adversely affect protein function. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Fulgent Genetics, Fulgent Genetics RCV002504350 SCV002813352 uncertain significance Autosomal recessive nonsyndromic hearing loss 12; Usher syndrome type 1D; Pituitary adenoma 5, multiple types 2021-10-14 criteria provided, single submitter clinical testing
Natera, Inc. RCV001835182 SCV002094396 uncertain significance Usher syndrome type 1 2020-02-13 no assertion criteria provided clinical testing

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