ClinVar Miner

Submissions for variant NM_022124.6(CDH23):c.4747G>T (p.Gly1583Cys)

dbSNP: rs775013186
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Total submissions: 4
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001202914 SCV001374049 uncertain significance not provided 2022-07-26 criteria provided, single submitter clinical testing This sequence change replaces glycine, which is neutral and non-polar, with cysteine, which is neutral and slightly polar, at codon 1583 of the CDH23 protein (p.Gly1583Cys). The frequency data for this variant in the population databases is considered unreliable, as metrics indicate poor data quality at this position in the gnomAD database. This variant has not been reported in the literature in individuals affected with CDH23-related conditions. ClinVar contains an entry for this variant (Variation ID: 934509). Algorithms developed to predict the effect of missense changes on protein structure and function are either unavailable or do not agree on the potential impact of this missense change (SIFT: "Deleterious"; PolyPhen-2: "Not Available"; Align-GVGD: "Class C65"). In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Baylor Genetics RCV001331232 SCV001523226 uncertain significance Autosomal recessive nonsyndromic hearing loss 12 2019-05-10 criteria provided, single submitter clinical testing This variant was determined to be of uncertain significance according to ACMG Guidelines, 2015 [PMID:25741868].
GeneDx RCV001202914 SCV002817456 uncertain significance not provided 2022-06-27 criteria provided, single submitter clinical testing In silico analysis supports that this missense variant has a deleterious effect on protein structure/function; Has not been previously published as pathogenic or benign to our knowledge
Ambry Genetics RCV002561108 SCV003601590 uncertain significance Inborn genetic diseases 2022-01-04 criteria provided, single submitter clinical testing The c.4747G>T (p.G1583C) alteration is located in exon 38 (coding exon 37) of the CDH23 gene. This alteration results from a G to T substitution at nucleotide position 4747, causing the glycine (G) at amino acid position 1583 to be replaced by a cysteine (C). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

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