ClinVar Miner

Submissions for variant NM_022124.6(CDH23):c.6440C>A (p.Thr2147Asn)

dbSNP: rs769241730
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Total submissions: 4
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Eurofins Ntd Llc (ga) RCV000344764 SCV000339141 uncertain significance not provided 2016-02-01 criteria provided, single submitter clinical testing
Invitae RCV000344764 SCV001222434 uncertain significance not provided 2022-08-05 criteria provided, single submitter clinical testing This sequence change replaces threonine, which is neutral and polar, with asparagine, which is neutral and polar, at codon 2147 of the CDH23 protein (p.Thr2147Asn). This variant is present in population databases (rs769241730, gnomAD 0.0009%). This variant has not been reported in the literature in individuals affected with CDH23-related conditions. ClinVar contains an entry for this variant (Variation ID: 285918). Algorithms developed to predict the effect of missense changes on protein structure and function are either unavailable or do not agree on the potential impact of this missense change (SIFT: "Deleterious"; PolyPhen-2: "Not Available"; Align-GVGD: "Class C0"). In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
GeneDx RCV000344764 SCV001993244 uncertain significance not provided 2019-08-14 criteria provided, single submitter clinical testing Not observed at a significant frequency in large population cohorts (Lek et al., 2016); In silico analysis, which includes protein predictors and evolutionary conservation, supports that this variant does not alter protein structure/function; Has not been previously published as pathogenic or benign to our knowledge
Natera, Inc. RCV001275576 SCV001460825 uncertain significance Usher syndrome type 1 2020-01-24 no assertion criteria provided clinical testing

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