ClinVar Miner

Submissions for variant NM_022489.4(INF2):c.599T>G (p.Val200Gly)

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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Victorian Clinical Genetics Services, Murdoch Childrens Research Institute RCV004595369 SCV005086608 uncertain significance Focal segmental glomerulosclerosis 5 2024-09-21 criteria provided, single submitter clinical testing Based on the classification scheme VCGS_Germline_v1.3.4, this variant is classified as VUS-3A. Following criteria are met: 0105 - The mechanism of disease for this gene is not clearly established. However, both loss of function and gain of function have been suggested (PMID: 32451589). (I) 0107 - This gene is associated with autosomal dominant disease. (I) 0112 - The condition associated with this gene has incomplete penetrance (PMID: 32451589). (I) 0115 - Variants in this gene are known to have variable expressivity, with interfamilial and intrafamilial phenotypic variabilities described (PMID: 32451589). (I) 0200 - Variant is predicted to result in a missense amino acid change from valine to glycine. (I) 0251 - This variant is heterozygous. (I) 0301 - Variant is absent from gnomAD (both v2 and v3). (SP) 0309 - An alternative amino acid change at the same position has been observed in gnomAD (v2) (7 heterozygotes, 0 homozygotes). (I) 0501 - Missense variant consistently predicted to be damaging by multiple in silico tools or highly conserved with a major amino acid change. (SP) 0600 - Variant is located in the annotated diaphanous FH3 domain (DECIPHER). (I) 0705 - No comparable missense variants have previous evidence for pathogenicity. However, an alternative change at this position p.(Val200Met) has been classified as likely benign by two clinical laboratories in ClinVar. (I) 0807 - This variant has no previous evidence of pathogenicity. (I) 0905 - No published segregation evidence has been identified for this variant. (I) 1007 - No published functional evidence has been identified for this variant. (I) 1205 - This variant has been shown to be maternally inherited. (I) Legend: (SP) - Supporting pathogenic, (I) - Information, (SB) - Supporting benign

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