ClinVar Miner

Submissions for variant NM_024529.5(CDC73):c.1537C>T (p.Arg513Trp)

dbSNP: rs1060500011
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Total submissions: 4
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV000456380 SCV000541283 uncertain significance Parathyroid carcinoma 2024-05-26 criteria provided, single submitter clinical testing This sequence change replaces arginine, which is basic and polar, with tryptophan, which is neutral and slightly polar, at codon 513 of the CDC73 protein (p.Arg513Trp). This variant is not present in population databases (gnomAD no frequency). This variant has not been reported in the literature in individuals affected with CDC73-related conditions. ClinVar contains an entry for this variant (Variation ID: 403881). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is not expected to disrupt CDC73 protein function with a negative predictive value of 80%. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Fulgent Genetics, Fulgent Genetics RCV002480337 SCV002786328 uncertain significance Hyperparathyroidism 1; Parathyroid carcinoma; Hyperparathyroidism 2 with jaw tumors 2022-04-06 criteria provided, single submitter clinical testing
Ambry Genetics RCV003168724 SCV003866992 uncertain significance Hereditary cancer-predisposing syndrome 2023-03-02 criteria provided, single submitter clinical testing The p.R513W variant (also known as c.1537C>T), located in coding exon 16 of the CDC73 gene, results from a C to T substitution at nucleotide position 1537. The arginine at codon 513 is replaced by tryptophan, an amino acid with dissimilar properties. This amino acid position is well conserved in available vertebrate species. In addition, the in silico prediction for this alteration is inconclusive. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.
Baylor Genetics RCV004567938 SCV005060040 uncertain significance Hyperparathyroidism 1 2023-12-17 criteria provided, single submitter clinical testing

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