ClinVar Miner

Submissions for variant NM_024577.3(SH3TC2):c.836A>G (p.Tyr279Cys) (rs200215156)

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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
GeneDx RCV000236277 SCV000292939 uncertain significance not provided 2017-05-17 criteria provided, single submitter clinical testing The Y279C variant has not been published as a pathogenic variant, nor has it been reported as a benign variant to our knowledge. The Y279C variant is observed in 7/10406 (0.07%) alleles from individuals of African background (Lek et al., 2016; 1000 Genomes Consortium et al., 2015; Exome Variant Server). This variant is a non-conservative amino acid substitution, which is likely to impact secondary protein structure as these residues differ in polarity, charge, size and/or other properties. However, this substitution occurs at a position that is not conserved, and missense variants in nearby residues have not been reported in the Human Gene Mutation Database in association with CMT4C (Stenson et al., 2014). In silico analysis is inconsistent in its predictions as to whether or not the variant is damaging to the protein structure/function.

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