ClinVar Miner

Submissions for variant NM_024642.5(GALNT12):c.155C>T (p.Pro52Leu)

gnomAD frequency: 0.00001  dbSNP: rs1588436185
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Ambry Genetics RCV004030335 SCV001172583 uncertain significance not specified 2023-05-28 criteria provided, single submitter clinical testing The p.P52L variant (also known as c.155C>T), located in coding exon 1 of the GALNT12 gene, results from a C to T substitution at nucleotide position 155. The proline at codon 52 is replaced by leucine, an amino acid with similar properties. This amino acid position is not well conserved in available vertebrate species. In addition, this alteration is predicted to be tolerated by in silico analysis. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.
Baylor Genetics RCV003461324 SCV004196134 uncertain significance Colorectal cancer, susceptibility to, 1 2023-10-16 criteria provided, single submitter clinical testing
Quest Diagnostics Nichols Institute San Juan Capistrano RCV003478613 SCV004219760 uncertain significance not provided 2023-07-03 criteria provided, single submitter clinical testing This variant has not been reported in the published literature. It also has not been reported in large, multi-ethnic general populations (Genome Aggregation Database, http://gnomad.broadinstitute.org). Analysis of this variant using bioinformatics tools for the prediction of the effect of amino acid changes on protein structure and function yielded predictions that this variant is benign. Based on the available information, we are unable to determine the clinical significance of this variant.

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