ClinVar Miner

Submissions for variant NM_024809.5(TCTN2):c.599G>A (p.Arg200Gln)

gnomAD frequency: 0.00978  dbSNP: rs79251326
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Total submissions: 9
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Genetic Services Laboratory, University of Chicago RCV000114230 SCV000147787 benign not specified 2016-07-20 criteria provided, single submitter clinical testing
Invitae RCV000204827 SCV000261862 benign Familial aplasia of the vermis; Meckel-Gruber syndrome 2024-01-29 criteria provided, single submitter clinical testing
PreventionGenetics, part of Exact Sciences RCV000114230 SCV000314457 benign not specified criteria provided, single submitter clinical testing
GeneDx RCV000114230 SCV000728882 benign not specified 2017-02-09 criteria provided, single submitter clinical testing This variant is considered likely benign or benign based on one or more of the following criteria: it is a conservative change, it occurs at a poorly conserved position in the protein, it is predicted to be benign by multiple in silico algorithms, and/or has population frequency not consistent with disease.
Genome Diagnostics Laboratory, University Medical Center Utrecht RCV000625192 SCV000744076 likely benign Meckel syndrome, type 8 2016-01-19 criteria provided, single submitter clinical testing
Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center RCV000625192 SCV000745547 likely benign Meckel syndrome, type 8 2015-09-21 criteria provided, single submitter clinical testing
Illumina Laboratory Services, Illumina RCV001110871 SCV001268355 benign Joubert syndrome 24 2017-04-27 criteria provided, single submitter clinical testing This variant was observed as part of a predisposition screen in an ostensibly healthy population. A literature search was performed for the gene, cDNA change, and amino acid change (where applicable). No publications were found based on this search. Allele frequency data from public databases was too high to be consistent with this variant causing disease. Therefore, this variant is classified as benign.
Illumina Laboratory Services, Illumina RCV000625192 SCV001270569 uncertain significance Meckel syndrome, type 8 2017-04-27 criteria provided, single submitter clinical testing This variant was observed as part of a predisposition screen in an ostensibly healthy population. A literature search was performed for the gene, cDNA change, and amino acid change (where applicable). No publications were found based on this search. Allele frequency data from public databases did not allow this variant to be ruled in or out of causing disease. Therefore, this variant is classified as a variant of unknown significance.
CeGaT Center for Human Genetics Tuebingen RCV003390794 SCV004134703 benign not provided 2024-02-01 criteria provided, single submitter clinical testing TCTN2: BP4, BS1, BS2

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