ClinVar Miner

Submissions for variant NM_025132.4(WDR19):c.2213A>T (p.Asp738Val)

dbSNP: rs1307951215
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001205121 SCV001376359 uncertain significance Asphyxiating thoracic dystrophy 5; Senior-Loken syndrome 8 2022-08-22 criteria provided, single submitter clinical testing In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Algorithms developed to predict the effect of sequence changes on RNA splicing suggest that this variant may create or strengthen a splice site. Algorithms developed to predict the effect of missense changes on protein structure and function are either unavailable or do not agree on the potential impact of this missense change (SIFT: "Deleterious"; PolyPhen-2: "Benign"; Align-GVGD: "Class C25"). ClinVar contains an entry for this variant (Variation ID: 936340). This variant has not been reported in the literature in individuals affected with WDR19-related conditions. This variant is not present in population databases (gnomAD no frequency). This sequence change replaces aspartic acid, which is acidic and polar, with valine, which is neutral and non-polar, at codon 738 of the WDR19 protein (p.Asp738Val).
ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories RCV003737027 SCV004562579 uncertain significance not provided 2023-09-28 criteria provided, single submitter clinical testing The WDR19 c.2213A>T; p.Asp738Val variant (rs1307951215), to our knowledge, is not reported in the medical literature but is reported in ClinVar (Variation ID: 936340). This variant is also absent from the Genome Aggregation Database, indicating it is not a common polymorphism. Computational analyses predict that this variant is deleterious (REVEL: 0.891). Due to limited information, the clinical significance of this variant is uncertain at this time.

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