ClinVar Miner

Submissions for variant NM_025132.4(WDR19):c.3068A>C (p.Tyr1023Ser)

gnomAD frequency: 0.00001  dbSNP: rs759424617
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Illumina Laboratory Services, Illumina RCV001150721 SCV001311809 uncertain significance Asphyxiating thoracic dystrophy 5 2017-04-28 criteria provided, single submitter clinical testing This variant was observed as part of a predisposition screen in an ostensibly healthy population. A literature search was performed for the gene, cDNA change, and amino acid change (where applicable). No publications were found based on this search. Allele frequency data from public databases did not allow this variant to be ruled in or out of causing disease. Therefore, this variant is classified as a variant of unknown significance.
Illumina Laboratory Services, Illumina RCV001150722 SCV001311810 uncertain significance Cranioectodermal dysplasia 4 2017-04-28 criteria provided, single submitter clinical testing This variant was observed as part of a predisposition screen in an ostensibly healthy population. A literature search was performed for the gene, cDNA change, and amino acid change (where applicable). No publications were found based on this search. Allele frequency data from public databases did not allow this variant to be ruled in or out of causing disease. Therefore, this variant is classified as a variant of unknown significance.
Invitae RCV002557250 SCV003477053 uncertain significance Asphyxiating thoracic dystrophy 5; Senior-Loken syndrome 8 2022-03-27 criteria provided, single submitter clinical testing In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Algorithms developed to predict the effect of missense changes on protein structure and function (SIFT, PolyPhen-2, Align-GVGD) all suggest that this variant is likely to be tolerated. ClinVar contains an entry for this variant (Variation ID: 903419). This variant has not been reported in the literature in individuals affected with WDR19-related conditions. This variant is present in population databases (rs759424617, gnomAD 0.003%). This sequence change replaces tyrosine, which is neutral and polar, with serine, which is neutral and polar, at codon 1023 of the WDR19 protein (p.Tyr1023Ser).

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