ClinVar Miner

Submissions for variant NM_025137.4(SPG11):c.4162-4C>T

dbSNP: rs777010404
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Total submissions: 4
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV000865847 SCV001006871 likely benign Hereditary spastic paraplegia 11 2023-11-15 criteria provided, single submitter clinical testing
Illumina Laboratory Services, Illumina RCV000865847 SCV001273862 uncertain significance Hereditary spastic paraplegia 11 2018-01-12 criteria provided, single submitter clinical testing This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score, this variant could not be ruled out of causing disease and therefore its association with disease required further investigation. A literature search was performed for the gene, cDNA change, and amino acid change (if applicable). No publications were found based on this search. This variant was therefore classified as a variant of unknown significance for this disease.
Genome Diagnostics Laboratory, The Hospital for Sick Children RCV001847062 SCV002105716 uncertain significance Hereditary spastic paraplegia 2018-09-01 criteria provided, single submitter clinical testing
Ambry Genetics RCV002332787 SCV002630268 likely benign Inborn genetic diseases 2022-07-18 criteria provided, single submitter clinical testing This alteration is classified as likely benign based on a combination of the following: population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.

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