ClinVar Miner

Submissions for variant NM_030777.4(SLC2A10):c.297_301del (p.Trp100fs)

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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Molecular Genetics, Royal Melbourne Hospital RCV005250428 SCV005900341 pathogenic Arterial tortuosity syndrome 2024-09-08 criteria provided, single submitter clinical testing This sequence change in SLC2A10 is a frameshift variant predicted to create a premature stop codon, p.(Trp100Glyfs*39), in biologically relevant exon 2/5 leading to nonsense-mediated decay in a gene in which loss-of-function is an established disease mechanism (PMID: 16550171). Loss-of-function variants are a well-established cause of disease in exon 2 (ClinVar). The highest population minor allele frequency in the population database gnomAD v4.1 is 0.0003% (3/1,180,040 alleles) in the European (non-Finnish) population, consistent with recessive disease. To our knowledge, this variant has not been previously reported in the relevant scientific literature or databases. Based on the classification scheme RMH Modified ACMG/AMP Guidelines v1.7.0, this variant is classified as PATHOGENIC. Following criteria are met: PVS1, PM2_Supporting, PM5_Supporting.

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