Total submissions: 9
Submitter | RCV | SCV | Clinical significance | Condition | Last evaluated | Review status | Method | Comment |
---|---|---|---|---|---|---|---|---|
Gene |
RCV000656814 | SCV000150057 | uncertain significance | not provided | 2023-10-20 | criteria provided, single submitter | clinical testing | Observed in an individual with breast cancer (Tung et al., 2015); Not observed at significant frequency in large population cohorts (gnomAD); In silico analysis supports that this missense variant does not alter protein structure/function; This variant is associated with the following publications: (PMID: 28873162, 11301010, 25186627) |
Ambry Genetics | RCV000116148 | SCV000184658 | uncertain significance | Hereditary cancer-predisposing syndrome | 2022-11-03 | criteria provided, single submitter | clinical testing | The p.I902M variant (also known as c.2706A>G), located in coding exon 18 of the BRIP1 gene, results from an A to G substitution at nucleotide position 2706. The isoleucine at codon 902 is replaced by methionine, an amino acid with highly similar properties. This alteration was also detected on a 25-gene panel test in a woman of Ashkenazi Jewish ancestry who was diagnosed with breast cancer at age 43 (Tung N et al. Cancer. 2015 Jan;121:25-33). This amino acid position is poorly conserved in available vertebrate species. In addition, this alteration is predicted to be tolerated by in silico analysis. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear. |
Invitae | RCV000229209 | SCV000291021 | uncertain significance | Familial cancer of breast; Fanconi anemia complementation group J | 2024-01-21 | criteria provided, single submitter | clinical testing | This sequence change replaces isoleucine, which is neutral and non-polar, with methionine, which is neutral and non-polar, at codon 902 of the BRIP1 protein (p.Ile902Met). This variant is present in population databases (rs587780244, gnomAD 0.05%). This missense change has been observed in individual(s) with breast cancer (PMID: 25186627). ClinVar contains an entry for this variant (Variation ID: 128179). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is not expected to disrupt BRIP1 protein function with a negative predictive value of 80%. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. |
Counsyl | RCV000410789 | SCV000489951 | uncertain significance | Fanconi anemia complementation group J | 2016-08-22 | criteria provided, single submitter | clinical testing | |
Counsyl | RCV000412341 | SCV000489952 | uncertain significance | Neoplasm of ovary | 2016-08-22 | criteria provided, single submitter | clinical testing | |
Quest Diagnostics Nichols Institute San Juan Capistrano | RCV000212329 | SCV000600906 | uncertain significance | not specified | 2017-07-17 | criteria provided, single submitter | clinical testing | |
Color Diagnostics, |
RCV000116148 | SCV000903015 | uncertain significance | Hereditary cancer-predisposing syndrome | 2023-07-21 | criteria provided, single submitter | clinical testing | This missense variant replaces isoleucine with methionine at codon 902 of the BRIP1 protein. Computational prediction suggests that this variant may not impact protein structure and function (internally defined REVEL score threshold <= 0.5, PMID: 27666373). To our knowledge, functional studies have not been reported for this variant. This variant has been reported in an individual affected with early-onset breast cancer, an individual affected with colorectal cancer, and an individual affected with an unspecified advanced cancer (PMID: 25186627, 28873162; DOI: 10.1200/JCO.2020.38.15_suppl.1538). This variant has been identified in 5/251356 chromosomes in the general population by the Genome Aggregation Database (gnomAD). The available evidence is insufficient to determine the role of this variant in disease conclusively. Therefore, this variant is classified as a Variant of Uncertain Significance. |
Sema4, |
RCV000116148 | SCV002533643 | uncertain significance | Hereditary cancer-predisposing syndrome | 2021-11-26 | criteria provided, single submitter | curation | |
Myriad Genetics, |
RCV003315654 | SCV004019472 | uncertain significance | Familial cancer of breast | 2023-03-02 | criteria provided, single submitter | clinical testing | This variant is classified as a variant of uncertain significance as there is insufficient evidence to determine its impact on protein function and/or cancer risk. |