ClinVar Miner

Submissions for variant NM_032409.3(PINK1):c.1075G>A (p.Ala359Thr)

gnomAD frequency: 0.00066  dbSNP: rs76753586
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Illumina Laboratory Services, Illumina RCV001098320 SCV001254678 uncertain significance Autosomal recessive early-onset Parkinson disease 6 2018-01-13 criteria provided, single submitter clinical testing This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score, this variant could not be ruled out of causing disease and therefore its association with disease required further investigation. A literature search was performed for the gene, cDNA change, and amino acid change (if applicable). No publications were found based on this search. This variant was therefore classified as a variant of unknown significance for this disease.
Labcorp Genetics (formerly Invitae), Labcorp RCV001098320 SCV002412692 likely benign Autosomal recessive early-onset Parkinson disease 6 2023-11-22 criteria provided, single submitter clinical testing
GeneDx RCV004590094 SCV005080625 uncertain significance not provided 2023-11-30 criteria provided, single submitter clinical testing Reported in a patient with early-onset Alzheimer's disease; however, a second PINK1 variant was not identified and this patient also harbors a variant in the GRN gene (PMID: 31217084); In silico analysis supports that this missense variant has a deleterious effect on protein structure/function; This variant is associated with the following publications: (PMID: 31217084)

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