ClinVar Miner

Submissions for variant NM_032444.4(SLX4):c.2065C>T (p.His689Tyr)

gnomAD frequency: 0.00003  dbSNP: rs138124860
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV000460931 SCV000547455 uncertain significance Fanconi anemia 2022-10-27 criteria provided, single submitter clinical testing This sequence change replaces histidine, which is basic and polar, with tyrosine, which is neutral and polar, at codon 689 of the SLX4 protein (p.His689Tyr). This variant is present in population databases (rs138124860, gnomAD 0.009%). This variant has not been reported in the literature in individuals affected with SLX4-related conditions. ClinVar contains an entry for this variant (Variation ID: 407915). Algorithms developed to predict the effect of missense changes on protein structure and function are either unavailable or do not agree on the potential impact of this missense change (SIFT: "Deleterious"; PolyPhen-2: "Probably Damaging"; Align-GVGD: "Class C0"). In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Fulgent Genetics, Fulgent Genetics RCV002481427 SCV002789233 uncertain significance Fanconi anemia complementation group P 2022-04-28 criteria provided, single submitter clinical testing

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