ClinVar Miner

Submissions for variant NM_032444.4(SLX4):c.2767A>T (p.Met923Leu)

gnomAD frequency: 0.00002  dbSNP: rs573280243
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001317190 SCV001507839 uncertain significance Fanconi anemia 2023-11-27 criteria provided, single submitter clinical testing This sequence change replaces methionine, which is neutral and non-polar, with leucine, which is neutral and non-polar, at codon 923 of the SLX4 protein (p.Met923Leu). This variant is present in population databases (rs573280243, gnomAD 0.02%). This variant has not been reported in the literature in individuals affected with SLX4-related conditions. ClinVar contains an entry for this variant (Variation ID: 1017960). An algorithm developed to predict the effect of missense changes on protein structure and function (PolyPhen-2) suggests that this variant is likely to be tolerated. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Fulgent Genetics, Fulgent Genetics RCV002493657 SCV002799743 uncertain significance Fanconi anemia complementation group P 2022-04-22 criteria provided, single submitter clinical testing
Ambry Genetics RCV003246871 SCV003950425 uncertain significance Inborn genetic diseases 2023-05-24 criteria provided, single submitter clinical testing The c.2767A>T (p.M923L) alteration is located in exon 12 (coding exon 11) of the SLX4 gene. This alteration results from a A to T substitution at nucleotide position 2767, causing the methionine (M) at amino acid position 923 to be replaced by a leucine (L). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

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