ClinVar Miner

Submissions for variant NM_032444.4(SLX4):c.2776T>C (p.Cys926Arg)

gnomAD frequency: 0.00001  dbSNP: rs201703364
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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV001341213 SCV001535069 uncertain significance Fanconi anemia 2022-03-27 criteria provided, single submitter clinical testing In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Algorithms developed to predict the effect of missense changes on protein structure and function output the following: SIFT: "Tolerated"; PolyPhen-2: "Benign"; Align-GVGD: "Class C0". The arginine amino acid residue is found in multiple mammalian species, which suggests that this missense change does not adversely affect protein function. ClinVar contains an entry for this variant (Variation ID: 1037975). This variant has not been reported in the literature in individuals affected with SLX4-related conditions. This variant is present in population databases (rs201703364, gnomAD 0.01%). This sequence change replaces cysteine, which is neutral and slightly polar, with arginine, which is basic and polar, at codon 926 of the SLX4 protein (p.Cys926Arg).

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