ClinVar Miner

Submissions for variant NM_032444.4(SLX4):c.3307C>T (p.Arg1103Cys)

gnomAD frequency: 0.00001  dbSNP: rs200708159
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV000817681 SCV000958258 uncertain significance Fanconi anemia 2022-07-29 criteria provided, single submitter clinical testing In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Algorithms developed to predict the effect of missense changes on protein structure and function output the following: SIFT: "Deleterious"; PolyPhen-2: "Benign"; Align-GVGD: "Class C0". The cysteine amino acid residue is found in multiple mammalian species, which suggests that this missense change does not adversely affect protein function. ClinVar contains an entry for this variant (Variation ID: 660480). This variant has not been reported in the literature in individuals affected with SLX4-related conditions. This variant is present in population databases (rs200708159, gnomAD 0.01%). This sequence change replaces arginine, which is basic and polar, with cysteine, which is neutral and slightly polar, at codon 1103 of the SLX4 protein (p.Arg1103Cys).
Fulgent Genetics, Fulgent Genetics RCV002495162 SCV002779261 uncertain significance Fanconi anemia complementation group P 2022-04-03 criteria provided, single submitter clinical testing

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