ClinVar Miner

Submissions for variant NM_032444.4(SLX4):c.799G>A (p.Ala267Thr)

gnomAD frequency: 0.00001  dbSNP: rs755289589
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV001343364 SCV001537340 uncertain significance Fanconi anemia 2023-07-17 criteria provided, single submitter clinical testing In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. This sequence change replaces alanine, which is neutral and non-polar, with threonine, which is neutral and polar, at codon 267 of the SLX4 protein (p.Ala267Thr). This variant is present in population databases (rs755289589, gnomAD 0.002%). This variant has not been reported in the literature in individuals affected with SLX4-related conditions. ClinVar contains an entry for this variant (Variation ID: 1039816). Algorithms developed to predict the effect of missense changes on protein structure and function output the following: SIFT: "Not Available"; PolyPhen-2: "Benign"; Align-GVGD: "Not Available". The threonine amino acid residue is found in multiple mammalian species, which suggests that this missense change does not adversely affect protein function.
Fulgent Genetics, Fulgent Genetics RCV002499683 SCV002779620 uncertain significance Fanconi anemia complementation group P 2022-04-11 criteria provided, single submitter clinical testing

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