ClinVar Miner

Submissions for variant NM_032634.4(PIGO):c.2411T>G (p.Met804Arg)

gnomAD frequency: 0.00001  dbSNP: rs763204004
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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV002034915 SCV002110997 uncertain significance Hyperphosphatasia with intellectual disability syndrome 2 2021-05-29 criteria provided, single submitter clinical testing In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Algorithms developed to predict the effect of sequence changes on RNA splicing suggest that this variant may create or strengthen a splice site, but this prediction has not been confirmed by published transcriptional studies. Algorithms developed to predict the effect of missense changes on protein structure and function are either unavailable or do not agree on the potential impact of this missense change (SIFT: "Deleterious"; PolyPhen-2: "Possibly Damaging"; Align-GVGD: "Class C0"). This variant has not been reported in the literature in individuals with PIGO-related conditions. This variant is present in population databases (rs763204004, ExAC 0.01%). This sequence change replaces methionine with arginine at codon 804 of the PIGO protein (p.Met804Arg). The methionine residue is moderately conserved and there is a moderate physicochemical difference between methionine and arginine.

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