ClinVar Miner

Submissions for variant NM_032638.5(GATA2):c.872-1G>C

dbSNP: rs2068663163
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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001036959 SCV001200350 likely pathogenic Deafness-lymphedema-leukemia syndrome; Monocytopenia with susceptibility to infections 2020-10-06 criteria provided, single submitter clinical testing In summary, the currently available evidence indicates that the variant is pathogenic, but additional data are needed to prove that conclusively. Therefore, this variant has been classified as Likely Pathogenic. Donor and acceptor splice site variants typically lead to a loss of protein function (PMID: 16199547), and loss-of-function variants in GATA2 are known to be pathogenic (PMID: 21670465, 23223431). This variant has not been reported in the literature in individuals with GATA2-related conditions. ClinVar contains an entry for this variant (Variation ID: 835953). This variant is not present in population databases (ExAC no frequency). This sequence change affects an acceptor splice site in intron 3 of the GATA2 gene. It is expected to disrupt RNA splicing and likely results in an absent or disrupted protein product.

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