ClinVar Miner

Submissions for variant NM_032737.4(LMNB2):c.1256C>T (p.Ser419Leu)

gnomAD frequency: 0.00016  dbSNP: rs368949581
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV000700084 SCV000828824 uncertain significance Progressive myoclonic epilepsy type 9; Lipodystrophy, partial, acquired, susceptibility to 2023-08-07 criteria provided, single submitter clinical testing In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is not expected to disrupt LMNB2 protein function. ClinVar contains an entry for this variant (Variation ID: 577353). This variant has not been reported in the literature in individuals affected with LMNB2-related conditions. The frequency data for this variant in the population databases is considered unreliable, as metrics indicate poor data quality at this position in the gnomAD database. This sequence change replaces serine, which is neutral and polar, with leucine, which is neutral and non-polar, at codon 419 of the LMNB2 protein (p.Ser419Leu).
Ambry Genetics RCV002533581 SCV003716566 uncertain significance Inborn genetic diseases 2022-01-05 criteria provided, single submitter clinical testing The c.1196C>T (p.S399L) alteration is located in exon 8 (coding exon 8) of the LMNB2 gene. This alteration results from a C to T substitution at nucleotide position 1196, causing the serine (S) at amino acid position 399 to be replaced by a leucine (L). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

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