Total submissions: 1
Submitter | RCV | SCV | Clinical significance | Condition | Last evaluated | Review status | Method | Comment |
---|---|---|---|---|---|---|---|---|
Gene |
RCV000255630 | SCV000322276 | pathogenic | not provided | 2016-05-25 | criteria provided, single submitter | clinical testing | The E2052D pathogenic variant in the NIPBL gene has been previously reported as a de-novo finding in one individual with Cornelia de Lange syndrome (Bhuiyan et al., 2006). This variant was not observed in approximately 6500 individuals of European and African American ancestry in the NHLBI Exome Sequencing Project, indicating it is not a common benign variant in these populations. The E2052D variant is a conservative amino acid substitution, which is not likely to impact secondary protein structure as these residues share similar properties. However, this substitution occurs at a position that is conserved across species. In silico analysis is inconsistent in its predictions as to whether or not the variant is damaging to the protein structure/function. Missense variants in nearby residues (P2056S, P2056S) have been reported in the Human Gene Mutation Database in association with Cornelia de Lange syndrome (Stenson et al., 2014), supporting the functional importance of this region of the protein. We interpret E2052D as a pathogenic variant. |