ClinVar Miner

Submissions for variant NM_138694.4(PKHD1):c.10628T>C (p.Leu3543Ser)

dbSNP: rs1554183398
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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV000557856 SCV000629900 pathogenic Autosomal recessive polycystic kidney disease 2022-06-17 criteria provided, single submitter clinical testing For these reasons, this variant has been classified as Pathogenic. Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is expected to disrupt PKHD1 protein function. ClinVar contains an entry for this variant (Variation ID: 458586). This missense change has been observed in individual(s) with autosomal recessive polycystic kidney disease (PMID: 15698423; Invitae). In at least one individual the data is consistent with being in trans (on the opposite chromosome) from a pathogenic variant. This variant is not present in population databases (gnomAD no frequency). This sequence change replaces leucine, which is neutral and non-polar, with serine, which is neutral and polar, at codon 3543 of the PKHD1 protein (p.Leu3543Ser).

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