ClinVar Miner

Submissions for variant NM_138694.4(PKHD1):c.334G>A (p.Gly112Arg) (rs149841071)

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Total submissions: 4
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
EGL Genetic Diagnostics,Eurofins Clinical Diagnostics RCV000595963 SCV000704700 uncertain significance not provided 2017-12-20 criteria provided, single submitter clinical testing
Counsyl RCV000671191 SCV000796143 uncertain significance Autosomal recessive polycystic kidney disease 2017-12-07 criteria provided, single submitter clinical testing
Fulgent Genetics,Fulgent Genetics RCV000671191 SCV000897305 uncertain significance Autosomal recessive polycystic kidney disease 2018-10-31 criteria provided, single submitter clinical testing
Invitae RCV000671191 SCV001413842 uncertain significance Autosomal recessive polycystic kidney disease 2019-10-17 criteria provided, single submitter clinical testing This sequence change replaces glycine with arginine at codon 112 of the PKHD1 protein (p.Gly112Arg). The glycine residue is weakly conserved and there is a moderate physicochemical difference between glycine and arginine. This variant is present in population databases (rs149841071, ExAC 0.06%). This variant has been observed in individuals affected with polycystic kidney disease (PMID: 15698423, 25646624). ClinVar contains an entry for this variant (Variation ID: 499278). Algorithms developed to predict the effect of missense changes on protein structure and function output the following: SIFT: "Tolerated"; PolyPhen-2: "Benign"; Align-GVGD: "Class C0". The arginine amino acid residue is found in multiple mammalian species, suggesting that this missense change does not adversely affect protein function. These predictions have not been confirmed by published functional studies and their clinical significance is uncertain. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.

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