ClinVar Miner

Submissions for variant NM_138694.4(PKHD1):c.4454G>A (p.Ser1485Asn)

dbSNP: rs370608473
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV000984959 SCV002251171 uncertain significance Autosomal recessive polycystic kidney disease 2021-08-28 criteria provided, single submitter clinical testing This sequence change replaces serine with asparagine at codon 1485 of the PKHD1 protein (p.Ser1485Asn). The serine residue is weakly conserved and there is a small physicochemical difference between serine and asparagine. This variant is not present in population databases (ExAC no frequency). This variant has not been reported in the literature in individuals affected with PKHD1-related conditions. ClinVar contains an entry for this variant (Variation ID: 800787). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is not expected to disrupt PKHD1 protein function. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Fulgent Genetics, Fulgent Genetics RCV002488074 SCV002789385 uncertain significance Polycystic kidney disease 4 2021-12-22 criteria provided, single submitter clinical testing
Biochemical Molecular Genetic Laboratory, King Abdulaziz Medical City RCV000984959 SCV001132876 uncertain significance Autosomal recessive polycystic kidney disease 2019-01-29 no assertion criteria provided clinical testing

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