ClinVar Miner

Submissions for variant NM_138694.4(PKHD1):c.8356A>G (p.Met2786Val)

gnomAD frequency: 0.00002  dbSNP: rs762313489
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001065177 SCV001230126 uncertain significance Autosomal recessive polycystic kidney disease 2022-08-16 criteria provided, single submitter clinical testing This sequence change replaces methionine, which is neutral and non-polar, with valine, which is neutral and non-polar, at codon 2786 of the PKHD1 protein (p.Met2786Val). This variant is present in population databases (rs762313489, gnomAD 0.01%). This variant has not been reported in the literature in individuals affected with PKHD1-related conditions. ClinVar contains an entry for this variant (Variation ID: 859139). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is not expected to disrupt PKHD1 protein function. Algorithms developed to predict the effect of sequence changes on RNA splicing suggest that this variant may create or strengthen a splice site. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Fulgent Genetics, Fulgent Genetics RCV002482090 SCV002779717 uncertain significance Polycystic kidney disease 4 2021-11-06 criteria provided, single submitter clinical testing
Natera, Inc. RCV001065177 SCV002077981 uncertain significance Autosomal recessive polycystic kidney disease 2018-11-08 no assertion criteria provided clinical testing

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