ClinVar Miner

Submissions for variant NM_139242.4(MTFMT):c.374C>T (p.Ser125Leu)

dbSNP: rs397514614
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Baylor Genetics RCV000033050 SCV000807220 pathogenic Combined oxidative phosphorylation defect type 15 2017-09-01 criteria provided, single submitter clinical testing This variant has been previously reported as disease-causing and was found once in our laboratory in trans with another pathogenic variant in a 12-year-old female with mitochondrial disorder, Leigh disease, intellectual disability, short stature, microcephaly, PDA, brachydactyly, pes planus, congenital hypothyroidism
DASA RCV000033050 SCV002073753 likely pathogenic Combined oxidative phosphorylation defect type 15 2022-02-05 criteria provided, single submitter clinical testing The c.374C>T;p.(Ser125Leu) missense variant has been observed in affected individual(s) and ClinVar contains an entry for this variant (ClinVar: 39829; PMID: 21907147) - PS4_supporting. The variant is present at low allele frequencies population databases (rs397514614 – gnomAD 0.00004013%; ABraOM no frequency - http://abraom.ib.usp.br/) - PM2_supporting. The p.(Ser125Leu) was detected in trans with a pathogenic variant (PMID: 21907147) - PM3_strong. Multiple lines of computational evidence support a deleterious effect on the gene or gene product - PP3. In summary, the currently available evidence indicates that the variant is likely pathogenic.
OMIM RCV000033050 SCV000056830 pathogenic Combined oxidative phosphorylation defect type 15 2011-09-07 no assertion criteria provided literature only

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