ClinVar Miner

Submissions for variant NM_144997.7(FLCN):c.1689del (p.His564fs)

gnomAD frequency: 0.00001  dbSNP: rs1314645884
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV000694143 SCV000822574 uncertain significance Birt-Hogg-Dube syndrome 2024-11-28 criteria provided, single submitter clinical testing This sequence change results in a frameshift in the FLCN gene (p.His564Thrfs*24). While this is not anticipated to result in nonsense mediated decay, it is expected to disrupt the last 16 amino acid(s) of the FLCN protein and extend the protein by 7 additional amino acid residues. This variant is not present in population databases (gnomAD no frequency). This variant has not been reported in the literature in individuals affected with FLCN-related conditions. ClinVar contains an entry for this variant (Variation ID: 572698). Experimental studies and prediction algorithms are not available or were not evaluated, and the functional significance of this variant is currently unknown. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Ambry Genetics RCV001012734 SCV001173223 likely benign Hereditary cancer-predisposing syndrome 2024-07-03 criteria provided, single submitter clinical testing This alteration is classified as likely benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.

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