ClinVar Miner

Submissions for variant NM_152424.4(AMER1):c.2884G>A (p.Ala962Thr)

gnomAD frequency: 0.00005  dbSNP: rs777905301
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001995423 SCV002262323 uncertain significance not provided 2021-10-11 criteria provided, single submitter clinical testing This sequence change replaces alanine with threonine at codon 962 of the AMER1 protein (p.Ala962Thr). The alanine residue is moderately conserved and there is a small physicochemical difference between alanine and threonine. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Algorithms developed to predict the effect of missense changes on protein structure and function are either unavailable or do not agree on the potential impact of this missense change (SIFT: "Deleterious"; PolyPhen-2: "Possibly Damaging"; Align-GVGD: "Class C0"). This variant has not been reported in the literature in individuals affected with AMER1-related conditions. This variant is present in population databases (rs777905301, ExAC 0.004%), including at least one homozygous and/or hemizygous individual.
GenomeConnect - Brain Gene Registry RCV003985536 SCV004801648 not provided Osteopathia striata with cranial sclerosis no assertion provided phenotyping only Variant classified as Uncertain significance and reported on 06-26-2019 by Prevention Genetics. Assertions are reported exactly as they appear on the patient provided laboratory report. GenomeConnect does not attempt to reinterpret the variant. The IDDRC-CTSA National Brain Gene Registry (BGR) is a study funded by the U.S. National Center for Advancing Translational Sciences (NCATS) and includes 13 Intellectual and Developmental Disability Research Center (IDDRC) institutions. The study is led by Principal Investigator Dr. Philip Payne from Washington University. The BGR is a data commons of gene variants paired with subject clinical information. This database helps scientists learn more about genetic changes and their impact on the brain and behavior. Participation in the Brain Gene Registry requires participation in GenomeConnect. More information about the Brain Gene Registry can be found on the study website - https://braingeneregistry.wustl.edu/.

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