ClinVar Miner

Submissions for variant NM_152564.5(VPS13B):c.8570C>T (p.Pro2857Leu)

gnomAD frequency: 0.00068  dbSNP: rs145890213
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Total submissions: 14
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Eurofins Ntd Llc (ga) RCV000259055 SCV000113854 likely benign not specified 2016-12-16 criteria provided, single submitter clinical testing
Genetic Services Laboratory, University of Chicago RCV000259055 SCV000153496 benign not specified 2018-01-23 criteria provided, single submitter clinical testing
Illumina Laboratory Services, Illumina RCV000293375 SCV000470832 uncertain significance Cohen syndrome 2018-01-13 criteria provided, single submitter clinical testing This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score, this variant could not be ruled out of causing disease and therefore its association with disease required further investigation. A literature search was performed for the gene, cDNA change, and amino acid change (if applicable). No publications were found based on this search. This variant was therefore classified as a variant of unknown significance for this disease.
Fulgent Genetics, Fulgent Genetics RCV000293375 SCV000611533 uncertain significance Cohen syndrome 2017-05-23 criteria provided, single submitter clinical testing
Labcorp Genetics (formerly Invitae), Labcorp RCV000293375 SCV000755402 benign Cohen syndrome 2024-01-27 criteria provided, single submitter clinical testing
Ambry Genetics RCV002313812 SCV000849146 likely benign Inborn genetic diseases 2018-09-19 criteria provided, single submitter clinical testing This alteration is classified as likely benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.
Institute of Human Genetics, University of Leipzig Medical Center RCV000293375 SCV001440084 likely benign Cohen syndrome 2019-01-01 criteria provided, single submitter clinical testing
Athena Diagnostics RCV000259055 SCV001475029 benign not specified 2020-07-16 criteria provided, single submitter clinical testing
Genome-Nilou Lab RCV000293375 SCV001652770 uncertain significance Cohen syndrome 2021-05-18 criteria provided, single submitter clinical testing
New York Genome Center RCV000293375 SCV002764536 uncertain significance Cohen syndrome 2020-12-22 criteria provided, single submitter clinical testing
CeGaT Center for Human Genetics Tuebingen RCV001705772 SCV004810461 likely benign not provided 2024-08-01 criteria provided, single submitter clinical testing VPS13B: BP4, BS2
Natera, Inc. RCV000293375 SCV001461444 likely benign Cohen syndrome 2020-06-05 no assertion criteria provided clinical testing
Clinical Genetics, Academic Medical Center RCV001705772 SCV001925793 likely benign not provided no assertion criteria provided clinical testing
Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center RCV000259055 SCV001971471 benign not specified no assertion criteria provided clinical testing

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