ClinVar Miner

Submissions for variant NM_153717.3(EVC):c.940-150T>C

gnomAD frequency: 0.00006  dbSNP: rs576076928
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Total submissions: 4
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories RCV001002557 SCV001160528 uncertain significance not specified 2019-05-03 criteria provided, single submitter clinical testing The EVC c.940-150T>C variant (rs576076928) is reported in the literature in at least one individual affected with Ellis-van Creveld syndrome who carried a second pathogenic variant on the opposite chromosome (Valencia 2009). This variant is only observed on two alleles in the Genome Aggregation Database, indicating it is not a common polymorphism. This is an intronic variant in a weakly conserved nucleotide, and computational analyses (Alamut v.2.11) predict that this variant may impact splicing by creating a novel cryptic donor splice site. In vitro functional analyses demonstrate altered splicing through incorporation of part of intron 7 (Valencia 2009). However, given the limited amount of clinical and functional data, the significance of the c.940-150T>C variant is uncertain at this time. References: Valencia M et al. Widening the mutation spectrum of EVC and EVC2: ectopic expression of Weyer variants in NIH 3T3 fibroblasts disrupts Hedgehog signaling. Hum Mutat. 2009 Dec;30(12):1667-75.
Labcorp Genetics (formerly Invitae), Labcorp RCV001427903 SCV001630593 likely benign Ellis-van Creveld syndrome; Curry-Hall syndrome 2024-12-16 criteria provided, single submitter clinical testing
Women's Health and Genetics/Laboratory Corporation of America, LabCorp RCV001002557 SCV004029930 uncertain significance not specified 2023-07-24 criteria provided, single submitter clinical testing
Natera, Inc. RCV001272633 SCV001454798 uncertain significance Ellis-van Creveld syndrome 2020-09-16 no assertion criteria provided clinical testing

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