ClinVar Miner

Submissions for variant NM_181426.2(CCDC39):c.472C>G (p.Leu158Val)

gnomAD frequency: 0.04150  dbSNP: rs57838737
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Total submissions: 6
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine RCV000222825 SCV000268840 benign not specified 2013-02-21 criteria provided, single submitter clinical testing Leu158Val in exon 4 of CCDC39: This variant is not expected to have clinical sig nificance because it has been identified in 13.0% (480/3692) of African American chromosomes from a broad population by the NHLBI Exome Sequencing Project (http ://evs.gs.washington.edu/EVS; dbSNP rs57838737).
Preventiongenetics, part of Exact Sciences RCV000222825 SCV000316709 benign not specified criteria provided, single submitter clinical testing
Illumina Laboratory Services, Illumina RCV001094928 SCV000442256 benign Primary ciliary dyskinesia 14 2018-01-13 criteria provided, single submitter clinical testing This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score and internal cut-off values, a variant classified as benign is not then subjected to further curation. The score for this variant resulted in a classification of benign for this disease.
Invitae RCV000285099 SCV000561425 benign Primary ciliary dyskinesia 2024-01-31 criteria provided, single submitter clinical testing
GeneDx RCV001706210 SCV001864015 benign not provided 2020-11-08 criteria provided, single submitter clinical testing
Ambry Genetics RCV000285099 SCV002635915 benign Primary ciliary dyskinesia 2016-07-08 criteria provided, single submitter clinical testing This alteration is classified as benign based on a combination of the following: population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.

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