ClinVar Miner

Submissions for variant NM_181776.3(SLC36A2):c.260G>T (p.Gly87Val)

gnomAD frequency: 0.00869  dbSNP: rs77010315
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Total submissions: 6
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV000950139 SCV001096424 benign not provided 2024-01-15 criteria provided, single submitter clinical testing
Mendelics RCV000002484 SCV001137012 uncertain significance Hyperglycinuria 2019-05-28 criteria provided, single submitter clinical testing
CeGaT Center for Human Genetics Tuebingen RCV000950139 SCV004157431 benign not provided 2022-11-01 criteria provided, single submitter clinical testing SLC36A2: BS1, BS2
OMIM RCV003159070 SCV000022641 affects Iminoglycinuria 2008-12-01 no assertion criteria provided literature only
OMIM RCV000002484 SCV000022642 affects Hyperglycinuria 2008-12-01 no assertion criteria provided literature only
Reproductive Health Research and Development, BGI Genomics RCV000002484 SCV001142350 benign Hyperglycinuria 2020-01-06 no assertion criteria provided curation NM_181776.2:c.260G>T in the SLC36A2 gene has an allele frequency of 0.041 in Ashkenazi Jewish subpopulation in the gnomAD database, including 24 homozygous occurrences. Broer et al. reported this variant in a patient with iminoglycinuria . However, iminoglycinuria was only observed when homozygous SLC36A2 G87V was combined with SLC6A20 T199M (PMID: 19033659). Pathogenic computational verdict because pathogenic predictions from DANN, EIGEN, FATHMM-MKL, MutationAssessor, MutationTaster, PrimateAI and SIFT. Taken together, we interprete this variant as Benign/Likely benign variant. ACMG/AMP criteria applied: BS1; BS2; PP3.

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